5.1.1. Điều tra tỷ lệ hại của ruồi đục quả trên quả nhãn tại 5 tỉnh Hải Dương, Hưng Yên, Sơn La, Tây Ninh, Cần Thơ chỉ ghi nhận ruồi đục quả phương đông B. dorsalis trong quả nhãn bắt đầu từ giai đoạn chuẩn bị thu hoạch và hại nặng nhất trong thời kỳ thu hoạch. Tuy nhiên tỷ lệ hại trên quả nhãn chỉ từ 0,36% đến 2,41%. Kết quả thu thập bằng bẫy ME ghi nhận có 2 loài trong vườn nhãn là B. dorsalis, B. correcta ở phía Bắc và 3 loài B. dorsalis, B. correcta và B. umbrosa ở phía Nam.
5.1.2. Kết quả nghiên cứu đặc điểm sinh học của ruồi đục quả B. dorsalis và B. correcta trên các giống nhãn khác nhau cho thấy cùi nhãn giống Miền Thiết và T2 là thức ăn phù hợp nhất cho ruồi đục quả B. dorsalis với hệ số nhân một thế hệ Ro lần lượt là 286,08 và 300,19 cái/cái, tỷ lệ tăng tự nhiên rm đạt 0,138 và 0,117 cái/cái/ngày. Tương tự ruồi đục quả B. correcta cũng có hệ số nhân của một thế hệ Ro lớn nhất và tỷ lệ tăng tự nhiên rm cao nhất khi nuôi trên cùi giống nhãn Miền Thiết và T2, với Ro lần lượt là 175,55 và 177,46 cái/cái và rm đều đạt 0,114 cái/cái/ngày.
Khi nuôi 2 loài ruồi đục quả trên 4 loại thức ăn nhân tạo, thức ăn có thành phần chính cám mì TA2 là phù hợp nhất để nhân nuôi ruồi đục quả B. dorsalis với thời gian một thế hệ T ngắn nhất 43,96 ngày và hệ số nhân của một thế hệ Ro là cao nhất 320,73 cái/cái. Còn đối với ruồi đục quả B. correcta, thức ăn có thành phần chính là cám gạo TA3 và cám mì TA2 là thích hợp nhất với hệ số nhân của một thế hệ Ro cao nhất lần lượt là 276,52 và 270,86 cái/cái, tỷ lệ tăng tự nhiên rm lần lượt là 0,119 và 0,136 cái/cái/ngày.
                
              
            TAATACTG 180 
MH988690 Bangladesh 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
KJ753908 Trung Quốc 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
MN016970 Ấn Độ 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
JQ692753 Sri Lanka 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
CT2.1.2 Cần Thơ 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
 197 
MF970795 Campuchia 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 162 
MN016978 Ấn Độ 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
DT3.1.2 Đồng Tháp 
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180 
 ***************************** ****************************** 
HP2 Hải Phòng 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
MW067302 Thái Lan 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 238 
MW410933 Trung Quốc 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
TN1.2 Tây Ninh 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
MH988690 Bangladesh 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
KJ753908 Trung Quốc 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
MN016970 Ấn Độ 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
JQ692753 Sri Lanka 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
CT2.1.2 Cần Thơ 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
MF970795 Campuchia 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 222 
MN016978 Ấn Độ 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
DT3.1.2 Đồng Tháp 
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240 
 ************************************************************ 
HP2 Hải Phòng 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
MW067302 Thái Lan 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 298 
MW410933 Trung Quốc 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
TN1.2 Tây Ninh 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
MH988690 Bangladesh 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
KJ753908 Trung Quốc 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
MN016970 Ấn Độ 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
 198 
JQ692753 Sri Lanka 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
CT2.1.2 Cần Thơ 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
MF970795 Campuchia 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 282 
MN016978 Ấn Độ 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
DT3.1.2 Đồng Tháp 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300 
 ************************************************************ 
HP2_Haiphong 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
MW067302_Thai_Lan 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
MW410933_Trung_Quoc 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
TN1.2_Tay_Ninh 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
MH988690_Bangladesh 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
KJ753908_Trung 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
MN016970_An_Do 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
JQ692753_Sri_Lanka 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT 
CT2.1.2_Can_Tho 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT 
MF970795_Campuchia 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT 
MN016978_An_Do 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT 
DT3.1.2_Dong_Thap 
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT 
 ***************************************************** ****** 
HP2_Haiphong 
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
MW067302_Thai_Lan 
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
MW410933_Trung_Quoc 
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
TN1.2_Tay_Ninh 
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
MH988690_Bangladesh 
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
 199 
KJ753908_Trung 
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
MN016970_An_Do 
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
JQ692753_Sri_Lanka 
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
CT2.1.2_Can_Tho 
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
MF970795_Campuchia 
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
MN016978_An_Do 
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
DT3.1.2_Dong_Thap 
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC 
 ***************** ****************************************** 
HP2_Haiphong 
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
MW067302_Thai_Lan GTT--------------------------------------------------------- 
MW410933_Trung_Quoc 
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
TN1.2_Tay_Ninh 
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
MH988690_Bangladesh 
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
KJ753908_Trung 
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
MN016970_An_Do 
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
JQ692753_Sri_Lanka 
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
CT2.1.2_Can_Tho 
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
MF970795_Campuchia 
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
MN016978_An_Do 
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
DT3.1.2_Dong_Thap 
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA 
 ************************************************************* 
HP2_Haiphong 
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
MW067302_Thai_Lan ---
GTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
MW410933_Trung_Quoc 
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
TN1.2_Tay_Ninh 
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
 200 
MH988690_Bangladesh 
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGATTTAGCAGGAGCTATCACT 
KJ753908_Trung 
GTTGTATTAACAGCTTTATTACTTCTGTTATCACTACCAGTTTTAGCAGGAGCTATCACT 
MN016970_An_Do 
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
JQ692753_Sri_Lanka 
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
CT2.1.2_Can_Tho 
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
MF970795_Campuchia 
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
MN016978_An_Do 
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
DT3.1.2_Dong_Thap 
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT 
 ***************** ***** ************* ******************* 
HP2_Haiphong 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
MW067302_Thai_Lan 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
MW410933_Trung_Quoc 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
TN1.2_Tay_Ninh 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
MH988690_Bangladesh 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
KJ753908_Trung 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCCGCAGGAGGAGGAGAC 
MN016970_An_Do 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
JQ692753_Sri_Lanka 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
CT2.1.2_Can_Tho 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
MF970795_Campuchia 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGGGAC 
MN016978_An_Do 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAT 
DT3.1.2_Dong_Thap 
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC 
 ******************************************** *********** ** 
HP2_Haiphong CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTC--- 
MW067302_Thai_Lan CCTATTCTCTACCAACACTTATTTTGATTTTTT------- 
MW410933_Trung_Quoc CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTCA-- 
TN1.2_Tay_Ninh CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTC--- 
 201 
MH988690_Bangladesh CCTATTCTCTACCAACACTTATTTTGAT------------ 
KJ753908_Trung CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTC--- 
MN016970_An_Do CCTATTCTCTATCAACACTTATTTTGATTTTTTGGT---- 
JQ692753_Sri_Lanka CCTATTCTCTATCAACACTTATTT---------------- 
CT2.1.2_Can_Tho CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTC--- 
MF970795_Campuchia CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTCACC 
MN016978_An_Do CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTCA-- 
DT3.1.2_Dong_Thap CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTC--- 
 *********** ************ 
2. KẾT QUẢ GIẢI TRÌNH TỪ CỦA BACTROCERA DORSALIS 
>CT2.1.1 B. dorsalis Can Tho 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
TGGTAACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATATTACTAACAGACCGAAACTT
AAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGATCCTATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC 
>TN2.1 B. dorsalis Tay Ninh 
ATAGTAGGAACATCTCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
CGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATATTACTAACAGACCGAAACTT
AAATACTTCATTTTTTGACCCTGCCGGAGGTGGAGATCCTATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC 
>SL2.1 B. dorsalis Son La 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
CGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATACTACTAACAGACCGAAACTT
AAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGATCCTATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC 
>HD1 B. dorsalis Hai Duong 
ATAGTGGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
CGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGGGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
 202 
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATACTACTAACAGACCGAAACTT
AAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGATCCCATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC 
 203 
CLUSTAL 2.1 Multiple Sequence Alignments 
Sequence type explicitly set to DNA 
Sequence format is Pearson 
Sequence 1: CT2.1.1_Can_Tho 637 bp 
Sequence 2: TN2.1_Tay_Ninh 637 bp 
Sequence 3: SL2.1_Son_La 637 bp 
Sequence 4: HP1_Hai_Phong 637 bp 
Sequence 5: MH707334_Thai_Lan 637 bp 
Sequence 6: KJ753919_Trung_Quoc 637 bp 
Sequence 7: MW410926_Trung_Quoc 637 bp 
Sequence 8: KX259497_An_Do 637 bp 
Sequence 9: OL693247_Bangladesh 637 bp 
Sequence 10: ON725008_An_Do 637 bp 
Sequence 11: MG689178_Lao 637 bp 
Sequence 12: MG689904_Malaysia 637 bp 
Sequence 13: MG688931_Bangladesh 637 bp 
Sequence 14: OR118087_Dai_Loan 637 bp 
Start of Pairwise alignments 
Aligning... 
Sequences (1:2) Aligned. Score: 99.2151 
Sequences (1:3) Aligned. Score: 99.529 
Sequences (1:4) Aligned. Score: 99.0581 
Sequences (1:5) Aligned. Score: 99.686 
Sequences (1:6) Aligned. Score: 99.686 
Sequences (1:7) Aligned. Score: 99.686 
Sequences (1:8) Aligned. Score: 99.2151 
Sequences (1:9) Aligned. Score: 99.3721 
Sequences (1:10) Aligned. Score: 99.529 
Sequences (1:11) Aligned. Score: 99.2151 
Sequences (1:12) Aligned. Score: 99.3721 
Sequences (1:13) Aligned. Score: 98.7441 
Sequences (1:14) Aligned. Score: 98.7441 
Sequences (2:3) Aligned. Score: 99.3721 
Sequences (2:4) Aligned. Score: 98.9011 
Sequences (2:5) Aligned. Score: 99.529 
Sequences (2:6) Aligned. Score: 99.529 
Sequences (2:7) Aligned. Score: 99.529 
Sequences (2:8) Aligned. Score: 100 
Sequences (2:9) Aligned. Score: 99.2151 
Sequences (2:10) Aligned. Score: 99.0581 
Sequences (2:11) Aligned. Score: 99.3721 
Sequences (2:12) Aligned. Score: 99.2151 
Sequences (2:13) Aligned. Score: 98.5871 
Sequences (2:14) Aligned. Score: 98.5871 
Sequences (3:4) Aligned. Score: 
Sequences (3:5) Aligned. Score: 99.843 
Sequences (3:6) Aligned. Score: 99.843 
Sequences (3:7) Aligned. Score: 99.843 
Sequences (3:8) Aligned. Score: 99.3721 
Sequences (3:9) Aligned. Score: 99.843 
Sequences (3:10) Aligned. Score: 99.3721 
Sequences (3:11) Aligned. Score: 99.3721 
Sequences (3:12) Aligned. Score: 99.529 
 204 
Sequences (3:13) Aligned. Score: 99.2151 
Sequences (3:14) Aligned. Score: 99.2151 
Sequences (4:5) Aligned. Score: 99.3721 
Sequences (4:6) Aligned. Score: 99.3721 
Sequences (4:7) Aligned. Score: 99.3721 
Sequences (4:8) Aligned. Score: 98.9011 
Sequences (4:9) Aligned. Score: 99.3721 
Sequences (4:10) Aligned. Score: 98.9011 
Sequences (4:11) Aligned. Score: 98.9011 
Sequences (4:12) Aligned. Score: 99.0581 
Sequences (4:13) Aligned. Score: 99.3721 
Sequences (4:14) Aligned. Score: 99.3721 
Sequences (5:6) Aligned. Score: 100 
Sequences (5:7) Aligned. Score: 100 
Sequences (5:8) Aligned. Score: 99.529 
Sequences (5:9) Aligned. Score: 99.686 
Sequences (5:10) Aligned. Score: 99.529 
Sequences (5:11) Aligned. Score: 99.529 
Sequences (5:12) Aligned. Score: 99.686 
Sequences (5:13) Aligned. Score: 99.0581 
Sequences (5:14) Aligned. Score: 99.0581 
Sequences (6:7) Aligned. Score: 100 
Sequences (6:8) Aligned. Score: 99.529 
Sequences (6:9) Aligned. Score: 99.686 
Sequences (6:10) Aligned. Score: 99.529 
Sequences (6:11) Aligned. Score: 99.529 
Sequences (6:12) Aligned. Score: 99.686 
Sequences (6:13) Aligned. Score: 99.0581 
Sequences (6:14) Aligned. Score: 99.0581 
Sequences (7:8) Aligned. Score: 99.529 
Sequences (7:9) Aligned. Score: 99.686 
Sequences (7:10) Aligned. Score: 99.529 
Sequences (7:11) Aligned. Score: 99.529 
Sequences (7:12) Aligned. Score: 99.686 
Sequences (7:13) Aligned. Score: 99.0581 
Sequences (7:14) Aligned. Score: 99.0581 
Sequences (8:9) Aligned. Score: 99.2151 
Sequences (8:10) Aligned. Score: 99.0581 
Sequences (8:11) Aligned. Score: 99.3721 
Sequences (8:12) Aligned. Score: 99.2151 
Sequences (8:13) Aligned. Score: 98.5871 
Sequences (8:14) Aligned. Score: 98.5871 
Sequences (9:10) Aligned. Score: 99.2151 
Sequences (9:11) Aligned. Score: 99.2151 
Sequences (9:12) Aligned. Score: 99.3721 
Sequences (9:13) Aligned. Score: 99.0581 
Sequences (9:14) Aligned. Score: 99.0581 
Sequences (10:11) Aligned. Score: 99.686 
Sequences (10:12) Aligned. Score: 99.843 
Sequences (10:13) Aligned. Score: 99.2151 
Sequences (10:14) Aligned. Score: 99.2151 
Sequences (11:12) Aligned. Score: 99.843 
Sequences (11:13) Aligned. Score: 99.2151 
Sequences (11:14) Aligned. Score: 99.2151 
Sequences (12:13) Aligned. Score: 99.3721 
Sequences (12:14) Aligned. Score: 99.3721 
Sequences (13:14) Aligned. Score: 100 
Guide tree file created: [clustalw.dnd] 
 205 
CLUSTAL 2.1 multiple sequence alignment 
SL2.1 Sơn La 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
OL693247 Bangladesh 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
MG689178 Lào 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
MG689904 Malaysia 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
ON725008 Ấn Độ 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
CT2.1.1 Cần Thơ 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
KJ753919 Trung Quốc 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
MW410926 Trung Quốc 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
MH707334 Thái Lan 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
TN2.1 Tây Ninh 
ATAGTAGGAACATCTCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
KX259497 Ấn Độ 
ATAGTAGGAACATCTCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
MG688931 Bangladesh 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
OR118087 Đài Loan 
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
HP1 Hải Phòng 
ATAGTGGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60 
 ***** ******** ********************************************* 
SL2.1 Sơn La 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
OL693247 Bangladesh 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
MG689178 Lào 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
MG689904 Malaysia 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
ON725008 Ấn Độ 
ATTGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
CT2.1.1 Cần Thơ 
ATTGGTAACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
KJ753919 Trung Quốc 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
MW410926 Trung Quốc 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
MH707334 Thái Lan 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
TN2.1 Tây Ninh 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
KX259497 Ấn Độ 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
MG688931 Bangladesh 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
OR118087 Đài Loan 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
 206 
HP1 Hải Phòng 
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120 
 ** *** ***************************************************** 
SL2.1 Sơn La 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
OL693247 Bangladesh 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
MG689178 Lào 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
MG689904 Malaysia 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
ON725008 Ấn Độ 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
CT2.1.1 Cần Thơ 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
KJ753919 Trung Quốc 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
MW410926 Trung Quốc 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
MH707334 Thái Lan 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
TN2.1 Tây Ninh 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
KX259497 Ấn Độ 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
MG688931 Bangladesh 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
OR118087 Đài Loan 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
HP1 Hải Phòng 
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180 
 ************************************************************ 
SL2.1 Sơn La 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
OL693247 Bangladesh 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
MG689178 Lào 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
MG689904 Malaysia 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
ON725008 Ấn Độ 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
CT2.1.1 Cần Thơ 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
KJ753919 Trung Quốc 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
MW410926 Trung Quốc 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
MH707334 Thái Lan 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
TN2.1 Tây Ninh 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
KX259497 Ấn Độ 
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
MG688931 Bangladesh 
GGGGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
 207 
OR118087 Đài Loan 
GGGGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
HP1 Hải Phòng 
GGGGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240 
 ** ********************************************************* 
SL2.1 Sơn La 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
OL693247 Bangladesh 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
MG689178 Lào 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
MG689904 Malaysia 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
ON725008 Ấn Độ 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
CT2.1.1 Cần Thơ 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
KJ753919 Trung Quốc 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
MW410926 Trung Quốc 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
MH707334 Thái Lan 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
TN2.1 Tây Ninh 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
KX259497 Ấn Độ 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
MG688931 Bangladesh 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
OR118087 Đài Loan 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
HP1 Hải Phòng 
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300 
 ************************************************************ 
SL2.1 Son La 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
OL693247_Bangladesh 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
MG689178_Lao 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
MG689904_Malaysia 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
ON725008_An_Do 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
CT2.1.1_Can_Tho 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
KJ753919_Trung_Quoc 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
MW410926_Trung_Quoc 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
MH707334_Thai_Lan 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
TN2.1_Tay_Ninh 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
KX259497_An_Do 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
 208 
MG688931_Bangladesh 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
OR118087_Dai_Loan 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
HP1_Hai_Phong 
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360 
 ************************************************************ 
SL2.1 Son La 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
OL693247_Bangladesh 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
MG689178_Lao 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
MG689904_Malaysia 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
ON725008_An_Do 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
CT2.1.1_Can_Tho 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
KJ753919_Trung_Quoc 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
MW410926_Trung_Quoc 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
MH707334_Thai_Lan 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
TN2.1_Tay_Ninh 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
KX259497_An_Do 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
MG688931_Bangladesh 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
OR118087_Dai_Loan 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
HP1_Hai_Phong 
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420 
 ************************************************************ 
SL2.1 Son La 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
OL693247_Bangladesh 
GTAATTAATATACGATCAACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
MG689178_Lao 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
MG689904_Malaysia 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
ON725008_An_Do 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
CT2.1.1_Can_Tho 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
KJ753919_Trung_Quoc 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
MW410926_Trung_Quoc 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
MH707334_Thai_Lan 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
TN2.1_Tay_Ninh 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
 209 
KX259497_An_Do 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
MG688931_Bangladesh 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
OR118087_Dai_Loan 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
HP1_Hai_Phong 
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480 
 ***************** ****************************************** 
SL2.1 Son La 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
OL693247_Bangladesh 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
MG689178_Lao 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
MG689904_Malaysia 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
ON725008_An_Do 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
CT2.1.1_Can_Tho 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
KJ753919_Trung_Quoc 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
MW410926_Trung_Quoc 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
MH707334_Thai_Lan 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
TN2.1_Tay_Ninh 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
KX259497_An_Do 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
MG688931_Bangladesh 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
OR118087_Dai_Loan 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
HP1_Hai_Phong 
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540 
 ************************************************************ 
SL2.1 Son La 
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
OL693247_Bangladesh 
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
MG689178_Lao 
ATATTACTAACAGACCGAAACTTAAATACTTCATTTTTTGACCCTGCCGGAGGAGGAGAT 600 
MG689904_Malaysia 
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
ON725008_An_Do 
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
CT2.1.1_Can_Tho 
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
KJ753919_Trung_Quoc 
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
MW410926_Trung_Quoc 
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
MH707334_Thai_Lan 
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
 210 
TN2.1_Tay_Ninh 
ATATTACTAACAGACCGAAACTTAAATACTTCATTTTTTGACCCTGCCGGAGGTGGAGAT 600 
KX259497_An_Do 
ATATTACTAACAGACCGAAACTTAAATACTTCATTTTTTGACCCTGCCGGAGGTGGAGAT 600 
MG688931_Bangladesh 
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
OR118087_Dai_Loan 
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
HP1_Hai_Phong 
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600 
 *** **************************** ******************** ****** 
SL2.1 Son La CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
OL693247_Bangladesh CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
MG689178_Lao CCTATTCTTTACCAACATTTATTTTGATTTTTTGGAC 637 
MG689904_Malaysia CCTATTCTTTACCAACATTTATTTTGATTTTTTGGAC 637 
ON725008_An_Do CCTATTCTTTACCAACATTTATTTTGATTTTTTGGAC 637 
CT2.1.1_Can_Tho CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
KJ753919_Trung_Quoc CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
MW410926_Trung_Quoc CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
MH707334_Thai_Lan CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
TN2.1_Tay_Ninh CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
KX259497_An_Do CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
MG688931_Bangladesh CCCATTCTTTACCAACATTTATTTTGATTCTTTGGAC 637 
OR118087_Dai_Loan CCCATTCTTTACCAACATTTATTTTGATTCTTTGGAC 637 
HP1_Hai_Phong CCCATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637 
 ** ************************** ***** *