5.1.1. Điều tra tỷ lệ hại của ruồi đục quả trên quả nhãn tại 5 tỉnh Hải Dương, Hưng Yên, Sơn La, Tây Ninh, Cần Thơ chỉ ghi nhận ruồi đục quả phương đông B. dorsalis trong quả nhãn bắt đầu từ giai đoạn chuẩn bị thu hoạch và hại nặng nhất trong thời kỳ thu hoạch. Tuy nhiên tỷ lệ hại trên quả nhãn chỉ từ 0,36% đến 2,41%. Kết quả thu thập bằng bẫy ME ghi nhận có 2 loài trong vườn nhãn là B. dorsalis, B. correcta ở phía Bắc và 3 loài B. dorsalis, B. correcta và B. umbrosa ở phía Nam.
5.1.2. Kết quả nghiên cứu đặc điểm sinh học của ruồi đục quả B. dorsalis và B. correcta trên các giống nhãn khác nhau cho thấy cùi nhãn giống Miền Thiết và T2 là thức ăn phù hợp nhất cho ruồi đục quả B. dorsalis với hệ số nhân một thế hệ Ro lần lượt là 286,08 và 300,19 cái/cái, tỷ lệ tăng tự nhiên rm đạt 0,138 và 0,117 cái/cái/ngày. Tương tự ruồi đục quả B. correcta cũng có hệ số nhân của một thế hệ Ro lớn nhất và tỷ lệ tăng tự nhiên rm cao nhất khi nuôi trên cùi giống nhãn Miền Thiết và T2, với Ro lần lượt là 175,55 và 177,46 cái/cái và rm đều đạt 0,114 cái/cái/ngày.
Khi nuôi 2 loài ruồi đục quả trên 4 loại thức ăn nhân tạo, thức ăn có thành phần chính cám mì TA2 là phù hợp nhất để nhân nuôi ruồi đục quả B. dorsalis với thời gian một thế hệ T ngắn nhất 43,96 ngày và hệ số nhân của một thế hệ Ro là cao nhất 320,73 cái/cái. Còn đối với ruồi đục quả B. correcta, thức ăn có thành phần chính là cám gạo TA3 và cám mì TA2 là thích hợp nhất với hệ số nhân của một thế hệ Ro cao nhất lần lượt là 276,52 và 270,86 cái/cái, tỷ lệ tăng tự nhiên rm lần lượt là 0,119 và 0,136 cái/cái/ngày.
TAATACTG 180
MH988690 Bangladesh
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
KJ753908 Trung Quốc
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
MN016970 Ấn Độ
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
JQ692753 Sri Lanka
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
CT2.1.2 Cần Thơ
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
197
MF970795 Campuchia
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 162
MN016978 Ấn Độ
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
DT3.1.2 Đồng Tháp
TTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGACTTGTCCCCCTAATACTG 180
***************************** ******************************
HP2 Hải Phòng
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
MW067302 Thái Lan
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 238
MW410933 Trung Quốc
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
TN1.2 Tây Ninh
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
MH988690 Bangladesh
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
KJ753908 Trung Quốc
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
MN016970 Ấn Độ
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
JQ692753 Sri Lanka
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
CT2.1.2 Cần Thơ
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
MF970795 Campuchia
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 222
MN016978 Ấn Độ
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
DT3.1.2 Đồng Tháp
GGAGCTCCTGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCCCCT 240
************************************************************
HP2 Hải Phòng
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
MW067302 Thái Lan
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 298
MW410933 Trung Quốc
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
TN1.2 Tây Ninh
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
MH988690 Bangladesh
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
KJ753908 Trung Quốc
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
MN016970 Ấn Độ
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
198
JQ692753 Sri Lanka
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
CT2.1.2 Cần Thơ
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
MF970795 Campuchia
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 282
MN016978 Ấn Độ
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
DT3.1.2 Đồng Tháp
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAATGGAGCTGGTACAGGTTGAACA 300
************************************************************
HP2_Haiphong
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
MW067302_Thai_Lan
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
MW410933_Trung_Quoc
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
TN1.2_Tay_Ninh
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
MH988690_Bangladesh
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
KJ753908_Trung
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
MN016970_An_Do
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
JQ692753_Sri_Lanka
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTAGCTATT
CT2.1.2_Can_Tho
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT
MF970795_Campuchia
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT
MN016978_An_Do
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT
DT3.1.2_Dong_Thap
GTTTACCCTCCCCTATCATCTGTTATTGCTCACGGAGGAGCTTCGGTTGATCTTGCTATT
***************************************************** ******
HP2_Haiphong
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
MW067302_Thai_Lan
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
MW410933_Trung_Quoc
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
TN1.2_Tay_Ninh
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
MH988690_Bangladesh
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
199
KJ753908_Trung
TTCTCACTCCACTTAGCTGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
MN016970_An_Do
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
JQ692753_Sri_Lanka
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
CT2.1.2_Can_Tho
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
MF970795_Campuchia
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
MN016978_An_Do
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
DT3.1.2_Dong_Thap
TTCTCACTCCACTTAGCCGGTATTTCCTCAATTTTAGGAGCAGTAAATTTTATCACAACC
***************** ******************************************
HP2_Haiphong
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
MW067302_Thai_Lan GTT---------------------------------------------------------
MW410933_Trung_Quoc
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
TN1.2_Tay_Ninh
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
MH988690_Bangladesh
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
KJ753908_Trung
GTTATTAACATGCGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
MN016970_An_Do
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
JQ692753_Sri_Lanka
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
CT2.1.2_Can_Tho
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
MF970795_Campuchia
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
MN016978_An_Do
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
DT3.1.2_Dong_Thap
GTTATTAACATACGATCGACAGGAATTTCATTTGACCGAATACCTCTATTCGTTTGAGCA
*************************************************************
HP2_Haiphong
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
MW067302_Thai_Lan ---
GTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
MW410933_Trung_Quoc
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
TN1.2_Tay_Ninh
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
200
MH988690_Bangladesh
GTTGTATTAACAGCTTTATTGCTTCTATTATCACTACCAGATTTAGCAGGAGCTATCACT
KJ753908_Trung
GTTGTATTAACAGCTTTATTACTTCTGTTATCACTACCAGTTTTAGCAGGAGCTATCACT
MN016970_An_Do
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
JQ692753_Sri_Lanka
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
CT2.1.2_Can_Tho
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
MF970795_Campuchia
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
MN016978_An_Do
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
DT3.1.2_Dong_Thap
GTTGTATTAACAGCTTTATTACTTCTATTATCACTACCAGTTTTAGCAGGAGCTATCACT
***************** ***** ************* *******************
HP2_Haiphong
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
MW067302_Thai_Lan
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
MW410933_Trung_Quoc
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
TN1.2_Tay_Ninh
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
MH988690_Bangladesh
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
KJ753908_Trung
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCCGCAGGAGGAGGAGAC
MN016970_An_Do
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
JQ692753_Sri_Lanka
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
CT2.1.2_Can_Tho
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
MF970795_Campuchia
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGGGAC
MN016978_An_Do
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAT
DT3.1.2_Dong_Thap
ATACTATTAACAGATCGAAACTTAAATACTTCCTTTTTTGACCCTGCAGGAGGAGGAGAC
******************************************** *********** **
HP2_Haiphong CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTC---
MW067302_Thai_Lan CCTATTCTCTACCAACACTTATTTTGATTTTTT-------
MW410933_Trung_Quoc CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTCA--
TN1.2_Tay_Ninh CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTC---
201
MH988690_Bangladesh CCTATTCTCTACCAACACTTATTTTGAT------------
KJ753908_Trung CCTATTCTCTACCAACACTTATTTTGATTTTTTGGTC---
MN016970_An_Do CCTATTCTCTATCAACACTTATTTTGATTTTTTGGT----
JQ692753_Sri_Lanka CCTATTCTCTATCAACACTTATTT----------------
CT2.1.2_Can_Tho CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTC---
MF970795_Campuchia CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTCACC
MN016978_An_Do CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTCA--
DT3.1.2_Dong_Thap CCTATTCTCTATCAACACTTATTTTGATTTTTTGGTC---
*********** ************
2. KẾT QUẢ GIẢI TRÌNH TỪ CỦA BACTROCERA DORSALIS
>CT2.1.1 B. dorsalis Can Tho
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
TGGTAACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATATTACTAACAGACCGAAACTT
AAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGATCCTATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC
>TN2.1 B. dorsalis Tay Ninh
ATAGTAGGAACATCTCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
CGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATATTACTAACAGACCGAAACTT
AAATACTTCATTTTTTGACCCTGCCGGAGGTGGAGATCCTATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC
>SL2.1 B. dorsalis Son La
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
CGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATACTACTAACAGACCGAAACTT
AAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGATCCTATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC
>HD1 B. dorsalis Hai Duong
ATAGTGGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTAAT
CGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTAT
AGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGGGCTCC
CGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCCCTTACATT
ACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACAGTTTACCCACCC
CTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATTTTTTCACTTCACTTA
202
GCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACAGTAATTAATATACGATC
GACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCAGTTGTATTAACAGCTTTATT
ACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACTATACTACTAACAGACCGAAACTT
AAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGATCCCATTCTTTACCAACATTTATTTTG
ATTTTTTGGTC
203
CLUSTAL 2.1 Multiple Sequence Alignments
Sequence type explicitly set to DNA
Sequence format is Pearson
Sequence 1: CT2.1.1_Can_Tho 637 bp
Sequence 2: TN2.1_Tay_Ninh 637 bp
Sequence 3: SL2.1_Son_La 637 bp
Sequence 4: HP1_Hai_Phong 637 bp
Sequence 5: MH707334_Thai_Lan 637 bp
Sequence 6: KJ753919_Trung_Quoc 637 bp
Sequence 7: MW410926_Trung_Quoc 637 bp
Sequence 8: KX259497_An_Do 637 bp
Sequence 9: OL693247_Bangladesh 637 bp
Sequence 10: ON725008_An_Do 637 bp
Sequence 11: MG689178_Lao 637 bp
Sequence 12: MG689904_Malaysia 637 bp
Sequence 13: MG688931_Bangladesh 637 bp
Sequence 14: OR118087_Dai_Loan 637 bp
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score: 99.2151
Sequences (1:3) Aligned. Score: 99.529
Sequences (1:4) Aligned. Score: 99.0581
Sequences (1:5) Aligned. Score: 99.686
Sequences (1:6) Aligned. Score: 99.686
Sequences (1:7) Aligned. Score: 99.686
Sequences (1:8) Aligned. Score: 99.2151
Sequences (1:9) Aligned. Score: 99.3721
Sequences (1:10) Aligned. Score: 99.529
Sequences (1:11) Aligned. Score: 99.2151
Sequences (1:12) Aligned. Score: 99.3721
Sequences (1:13) Aligned. Score: 98.7441
Sequences (1:14) Aligned. Score: 98.7441
Sequences (2:3) Aligned. Score: 99.3721
Sequences (2:4) Aligned. Score: 98.9011
Sequences (2:5) Aligned. Score: 99.529
Sequences (2:6) Aligned. Score: 99.529
Sequences (2:7) Aligned. Score: 99.529
Sequences (2:8) Aligned. Score: 100
Sequences (2:9) Aligned. Score: 99.2151
Sequences (2:10) Aligned. Score: 99.0581
Sequences (2:11) Aligned. Score: 99.3721
Sequences (2:12) Aligned. Score: 99.2151
Sequences (2:13) Aligned. Score: 98.5871
Sequences (2:14) Aligned. Score: 98.5871
Sequences (3:4) Aligned. Score:
Sequences (3:5) Aligned. Score: 99.843
Sequences (3:6) Aligned. Score: 99.843
Sequences (3:7) Aligned. Score: 99.843
Sequences (3:8) Aligned. Score: 99.3721
Sequences (3:9) Aligned. Score: 99.843
Sequences (3:10) Aligned. Score: 99.3721
Sequences (3:11) Aligned. Score: 99.3721
Sequences (3:12) Aligned. Score: 99.529
204
Sequences (3:13) Aligned. Score: 99.2151
Sequences (3:14) Aligned. Score: 99.2151
Sequences (4:5) Aligned. Score: 99.3721
Sequences (4:6) Aligned. Score: 99.3721
Sequences (4:7) Aligned. Score: 99.3721
Sequences (4:8) Aligned. Score: 98.9011
Sequences (4:9) Aligned. Score: 99.3721
Sequences (4:10) Aligned. Score: 98.9011
Sequences (4:11) Aligned. Score: 98.9011
Sequences (4:12) Aligned. Score: 99.0581
Sequences (4:13) Aligned. Score: 99.3721
Sequences (4:14) Aligned. Score: 99.3721
Sequences (5:6) Aligned. Score: 100
Sequences (5:7) Aligned. Score: 100
Sequences (5:8) Aligned. Score: 99.529
Sequences (5:9) Aligned. Score: 99.686
Sequences (5:10) Aligned. Score: 99.529
Sequences (5:11) Aligned. Score: 99.529
Sequences (5:12) Aligned. Score: 99.686
Sequences (5:13) Aligned. Score: 99.0581
Sequences (5:14) Aligned. Score: 99.0581
Sequences (6:7) Aligned. Score: 100
Sequences (6:8) Aligned. Score: 99.529
Sequences (6:9) Aligned. Score: 99.686
Sequences (6:10) Aligned. Score: 99.529
Sequences (6:11) Aligned. Score: 99.529
Sequences (6:12) Aligned. Score: 99.686
Sequences (6:13) Aligned. Score: 99.0581
Sequences (6:14) Aligned. Score: 99.0581
Sequences (7:8) Aligned. Score: 99.529
Sequences (7:9) Aligned. Score: 99.686
Sequences (7:10) Aligned. Score: 99.529
Sequences (7:11) Aligned. Score: 99.529
Sequences (7:12) Aligned. Score: 99.686
Sequences (7:13) Aligned. Score: 99.0581
Sequences (7:14) Aligned. Score: 99.0581
Sequences (8:9) Aligned. Score: 99.2151
Sequences (8:10) Aligned. Score: 99.0581
Sequences (8:11) Aligned. Score: 99.3721
Sequences (8:12) Aligned. Score: 99.2151
Sequences (8:13) Aligned. Score: 98.5871
Sequences (8:14) Aligned. Score: 98.5871
Sequences (9:10) Aligned. Score: 99.2151
Sequences (9:11) Aligned. Score: 99.2151
Sequences (9:12) Aligned. Score: 99.3721
Sequences (9:13) Aligned. Score: 99.0581
Sequences (9:14) Aligned. Score: 99.0581
Sequences (10:11) Aligned. Score: 99.686
Sequences (10:12) Aligned. Score: 99.843
Sequences (10:13) Aligned. Score: 99.2151
Sequences (10:14) Aligned. Score: 99.2151
Sequences (11:12) Aligned. Score: 99.843
Sequences (11:13) Aligned. Score: 99.2151
Sequences (11:14) Aligned. Score: 99.2151
Sequences (12:13) Aligned. Score: 99.3721
Sequences (12:14) Aligned. Score: 99.3721
Sequences (13:14) Aligned. Score: 100
Guide tree file created: [clustalw.dnd]
205
CLUSTAL 2.1 multiple sequence alignment
SL2.1 Sơn La
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
OL693247 Bangladesh
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
MG689178 Lào
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
MG689904 Malaysia
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
ON725008 Ấn Độ
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
CT2.1.1 Cần Thơ
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
KJ753919 Trung Quốc
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
MW410926 Trung Quốc
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
MH707334 Thái Lan
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
TN2.1 Tây Ninh
ATAGTAGGAACATCTCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
KX259497 Ấn Độ
ATAGTAGGAACATCTCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
MG688931 Bangladesh
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
OR118087 Đài Loan
ATAGTAGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
HP1 Hải Phòng
ATAGTGGGAACATCCCTTAGAATTTTAGTCCGAGCTGAACTCGGTCACCCAGGAGCTTTA 60
***** ******** *********************************************
SL2.1 Sơn La
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
OL693247 Bangladesh
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
MG689178 Lào
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
MG689904 Malaysia
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
ON725008 Ấn Độ
ATTGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
CT2.1.1 Cần Thơ
ATTGGTAACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
KJ753919 Trung Quốc
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
MW410926 Trung Quốc
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
MH707334 Thái Lan
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
TN2.1 Tây Ninh
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
KX259497 Ấn Độ
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
MG688931 Bangladesh
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
OR118087 Đài Loan
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
206
HP1 Hải Phòng
ATCGGTGACGATCAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTC 120
** *** *****************************************************
SL2.1 Sơn La
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
OL693247 Bangladesh
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
MG689178 Lào
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
MG689904 Malaysia
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
ON725008 Ấn Độ
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
CT2.1.1 Cần Thơ
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
KJ753919 Trung Quốc
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
MW410926 Trung Quốc
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
MH707334 Thái Lan
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
TN2.1 Tây Ninh
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
KX259497 Ấn Độ
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
MG688931 Bangladesh
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
OR118087 Đài Loan
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
HP1 Hải Phòng
TTTATAGTTATACCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTA 180
************************************************************
SL2.1 Sơn La
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
OL693247 Bangladesh
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
MG689178 Lào
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
MG689904 Malaysia
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
ON725008 Ấn Độ
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
CT2.1.1 Cần Thơ
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
KJ753919 Trung Quốc
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
MW410926 Trung Quốc
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
MH707334 Thái Lan
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
TN2.1 Tây Ninh
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
KX259497 Ấn Độ
GGAGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
MG688931 Bangladesh
GGGGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
207
OR118087 Đài Loan
GGGGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
HP1 Hải Phòng
GGGGCTCCCGATATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCT 240
** *********************************************************
SL2.1 Sơn La
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
OL693247 Bangladesh
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
MG689178 Lào
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
MG689904 Malaysia
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
ON725008 Ấn Độ
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
CT2.1.1 Cần Thơ
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
KJ753919 Trung Quốc
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
MW410926 Trung Quốc
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
MH707334 Thái Lan
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
TN2.1 Tây Ninh
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
KX259497 Ấn Độ
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
MG688931 Bangladesh
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
OR118087 Đài Loan
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
HP1 Hải Phòng
TCCCTTACATTACTATTAGTAAGAAGTATAGTAGAAAACGGAGCTGGTACAGGTTGAACA 300
************************************************************
SL2.1 Son La
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
OL693247_Bangladesh
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
MG689178_Lao
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
MG689904_Malaysia
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
ON725008_An_Do
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
CT2.1.1_Can_Tho
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
KJ753919_Trung_Quoc
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
MW410926_Trung_Quoc
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
MH707334_Thai_Lan
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
TN2.1_Tay_Ninh
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
KX259497_An_Do
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
208
MG688931_Bangladesh
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
OR118087_Dai_Loan
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
HP1_Hai_Phong
GTTTACCCACCCCTATCATCTGTTATTGCACACGGAGGAGCTTCAGTTGACCTAGCTATT 360
************************************************************
SL2.1 Son La
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
OL693247_Bangladesh
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
MG689178_Lao
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
MG689904_Malaysia
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
ON725008_An_Do
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
CT2.1.1_Can_Tho
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
KJ753919_Trung_Quoc
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
MW410926_Trung_Quoc
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
MH707334_Thai_Lan
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
TN2.1_Tay_Ninh
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
KX259497_An_Do
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
MG688931_Bangladesh
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
OR118087_Dai_Loan
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
HP1_Hai_Phong
TTTTCACTTCACTTAGCGGGTATTTCCTCAATTTTAGGAGCAGTAAATTTCATTACAACA 420
************************************************************
SL2.1 Son La
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
OL693247_Bangladesh
GTAATTAATATACGATCAACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
MG689178_Lao
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
MG689904_Malaysia
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
ON725008_An_Do
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
CT2.1.1_Can_Tho
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
KJ753919_Trung_Quoc
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
MW410926_Trung_Quoc
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
MH707334_Thai_Lan
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
TN2.1_Tay_Ninh
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
209
KX259497_An_Do
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
MG688931_Bangladesh
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
OR118087_Dai_Loan
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
HP1_Hai_Phong
GTAATTAATATACGATCGACAGGAATCACCTTTGATCGAATACCTCTATTCGTTTGAGCA 480
***************** ******************************************
SL2.1 Son La
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
OL693247_Bangladesh
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
MG689178_Lao
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
MG689904_Malaysia
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
ON725008_An_Do
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
CT2.1.1_Can_Tho
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
KJ753919_Trung_Quoc
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
MW410926_Trung_Quoc
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
MH707334_Thai_Lan
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
TN2.1_Tay_Ninh
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
KX259497_An_Do
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
MG688931_Bangladesh
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
OR118087_Dai_Loan
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
HP1_Hai_Phong
GTTGTATTAACAGCTTTATTACTTTTATTATCATTACCAGTTTTAGCAGGGGCTATTACT 540
************************************************************
SL2.1 Son La
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
OL693247_Bangladesh
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
MG689178_Lao
ATATTACTAACAGACCGAAACTTAAATACTTCATTTTTTGACCCTGCCGGAGGAGGAGAT 600
MG689904_Malaysia
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
ON725008_An_Do
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
CT2.1.1_Can_Tho
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
KJ753919_Trung_Quoc
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
MW410926_Trung_Quoc
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
MH707334_Thai_Lan
ATATTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
210
TN2.1_Tay_Ninh
ATATTACTAACAGACCGAAACTTAAATACTTCATTTTTTGACCCTGCCGGAGGTGGAGAT 600
KX259497_An_Do
ATATTACTAACAGACCGAAACTTAAATACTTCATTTTTTGACCCTGCCGGAGGTGGAGAT 600
MG688931_Bangladesh
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
OR118087_Dai_Loan
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
HP1_Hai_Phong
ATACTACTAACAGACCGAAACTTAAATACTTCCTTTTTTGACCCTGCCGGAGGAGGAGAT 600
*** **************************** ******************** ******
SL2.1 Son La CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
OL693247_Bangladesh CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
MG689178_Lao CCTATTCTTTACCAACATTTATTTTGATTTTTTGGAC 637
MG689904_Malaysia CCTATTCTTTACCAACATTTATTTTGATTTTTTGGAC 637
ON725008_An_Do CCTATTCTTTACCAACATTTATTTTGATTTTTTGGAC 637
CT2.1.1_Can_Tho CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
KJ753919_Trung_Quoc CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
MW410926_Trung_Quoc CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
MH707334_Thai_Lan CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
TN2.1_Tay_Ninh CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
KX259497_An_Do CCTATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
MG688931_Bangladesh CCCATTCTTTACCAACATTTATTTTGATTCTTTGGAC 637
OR118087_Dai_Loan CCCATTCTTTACCAACATTTATTTTGATTCTTTGGAC 637
HP1_Hai_Phong CCCATTCTTTACCAACATTTATTTTGATTTTTTGGTC 637
** ************************** ***** *